From Mellieha: Three Bay Cruise including the Blue Lagoon

This boat tour from Mellieha offers a fantastic way to explore Malta’s most iconic seaside gems. Spanning about six hours, it covers the Blue Lagoon, Crystal Lagoon, and Alfa Rock Bay — three spots that showcase the region’s crystal-clear waters, dramatic cliffs, and tranquil beaches. Whether you’re into swimming, snorkelling, or simply soaking up the sun with a view, this cruise packs in a lot of value with multiple stops and a relaxed vibe.

One of the biggest assets of this trip is the small group size and friendly crew, which makes it feel more personal and less like a crowded tourist sausage fest. The guides—who are described as knowledgeable, attentive, and hospitable—really make an effort to ensure everyone has a good time. However, a potential consideration is that Blue Lagoon’s popularity means it can get crowded, especially during peak season, so some travelers might prefer skipping the shore or visiting early in the day.

If you love stunning scenery, sea caves, and a laid-back atmosphere, this tour is ideal. It’s especially suited for those who want a well-organized, value-packed day with plenty of opportunities to swim and explore, but it’s less suited for those with mobility issues or anyone prone to seasickness.

• Stunning stops at the Blue Lagoon, Crystal Lagoon, and Alfa Rock Bay provide varied scenery and waters perfect for swimming and snorkelling.
• Small-group environment and friendly staff create a relaxed, personalized experience.
• Flexible options to stay on the boat or go ashore at Blue Lagoon cater to different travel styles.
• The itinerary is weather-dependent and might change slightly, but the core stops are usually consistent.
• Cost-effective at $46, offering excellent value considering the multiple swim stops and scenic cruising.
• Booking in advance for Blue Lagoon ashore is essential due to government regulations, adding a layer of planning but ensuring access.

Starting from Mellieha, the journey kicks off at the Marfa Bay jetty, where a white boat named ‘Pegasus’ awaits. The crew, equipped with local knowledge and friendly energy, help set the tone for a day of relaxing exploration. The boat itself is described as well-maintained, offering shelter and onboard toilets—small comforts that make the cruise more enjoyable.

The Blue Lagoon: The Showstopper (Approx. 1.5 hours)

The first stop takes you to the famous Blue Lagoon on Comino Island. This spot is often the highlight for most visitors, thanks to its transparent waters and white sandy bottom. The reviews highlight how incredible the lagoon is for swimming and snorkelling, with some opting to stay on the boat to avoid the crowds.

A word of warning: due to its popularity, the Blue Lagoon can become crowded, especially in summer. One review mentioned that they didn’t bother getting off because it was so busy, choosing instead to jump in from the boat. You’ll want to plan ahead by securing an access pass online, which is required to disembark ashore (and is a government mandate in Malta from May 2025).

You can check availability for your dates here:

Crystal Lagoon: The Hidden Gem (Approx. 1 hour)

Next, the boat cruises to the Crystal Lagoon, located on the west side of Comino. This more sheltered spot is beloved by snorkellers and divers, thanks to its stunning turquoise waters and impressive sea caves. It’s less crowded than the Blue Lagoon, offering a quieter, more peaceful environment to explore the underwater world. Reviewers have raved about the stunning 360-degree views and the opportunity to explore sea caves, making this a memorable snorkelling spot.

Alfa Rock Bay: A Secluded Escape (Approx. 1 hour)

The trip then ventures to Alfa Rock Bay on Gozo’s southeast coast. It’s described as a “hidden gem” — a small, deserted island sitting near a pretty pebble beach. Unlike the busy Blue Lagoon, Alfa Rock Bay provides a more tranquil setting, perfect for swimming and relaxing away from the crowds. Many reviewers appreciate the seclusion and pristine environment, especially during the summer when other beaches are packed.

Return Journey: Scenic Passages and Iconic Formations

On the way back, the boat passes by the Santa Maria Caves and the famous Elephant Head rock formation. These natural sculptures add visual interest to the cruise, giving everyone plenty of photo opportunities. Many guests say the entire route offers stunning vistas that are best enjoyed with a cold drink in hand—something available at the onboard bar, which offers reasonably priced snacks and drinks.

The tour provides a balanced mix of organised swimming stops and scenic cruising. The crew is praised for their helpfulness—many reviews mention guides like Danny and Chandler, who are described as attentive and friendly, with some saying they “took great care of everyone.” Time at each stop is generally around 1 to 1.5 hours, which allows enough time to swim, snorkel, relax, or explore the shoreline.

Onboard facilities include toilets, showers, and a small bar serving snacks and drinks. It’s a good idea to bring your own essentials such as sunscreen, a towel, snorkelling gear (if you have your own), and cash for extras. The boat’s size accommodates around 40 passengers, avoiding the overcrowded feeling of larger tour boats.

The Price: Does It Stack Up?

For $46 per person, this cruise offers impressive value, especially given the multiple stops, scenic cruise, and friendly crew. Reviewers consistently mention that it’s a great deal for a full day of activities and sightseeing. Many highlight the quality of guides and the peaceful atmosphere as real highlights, considering it a better experience than larger, busier tours.

The Booking and Regulations

Remember that booking your Blue Lagoon ashore access pass in advance is essential due to new Maltese regulations. The passes are available online, and it’s recommended to select the morning slot. Failing to secure a pass means missing out on disembarking at the Blue Lagoon, which is a significant part of the experience for many.

Guests consistently praise the knowledgeable guides who provide insights into each stop, making the trip more than just a sunbathing cruise. One reviewer said, “they gave us some insights on each location,” which enriched their understanding and appreciation of the scenery.

Several mention how much they appreciated the relaxed, friendly atmosphere—no drama, plenty of opportunity to swim at your own pace, and the option to stay on the boat if you preferred quieter surroundings. The small group size means fewer crowds and more space to spread out, a real plus during busy summer months.

A few practical tips: bring lots of food because while there’s a small snack bar, the wait can be long, and you’ll likely be hungry after swimming. Sunglasses, sun hats, and sunscreens are must-haves to stay comfortable in the Maltese sun.

This cruise is ideal for families, friends, or couples looking for an easy, scenic day out. It’s perfect if you want to hit multiple scenic spots without the hassle of arranging your own boat trips, especially considering the value for money. The stops at the lagoons provide excellent opportunities for swimming and snorkelling—crucial if you enjoy exploring marine life.

However, if you’re sensitive to seasickness, be aware that the waters can get a little choppy, especially if the weather isn’t perfect. The tour isn’t designed for those with mobility challenges, as some walking or disembarking ashore at Blue Lagoon requires a bit of agility.

This Mellieha boat tour hits a sweet spot for travelers wanting beautiful scenery, relaxed pace, and good value. The combination of iconic Blue Lagoon, secluded Alfa Rock Bay, and the less crowded Crystal Lagoon makes it a versatile choice for many. The knowledgeable, friendly guides and well-maintained boat ensure comfort and safety, adding to the overall positive vibe.

While the Blue Lagoon can be crowded, the tour offers plenty of ways to enjoy the scenery—whether on the boat or ashore with a pass. If you’re after a day of swimming, snorkelling, and relaxing in some of Malta’s most photogenic locations, this trip checks all the boxes.

Do I need to book a Blue Lagoon access pass separately? Yes, you must book the access pass online before the tour, especially if you want to ashore at the Blue Lagoon. It’s a government regulation, and passes are limited, so plan ahead.

What is included in the tour price? The $46 ticket covers the scenic cruise, swim stops at Blue Lagoon, Crystal Lagoon, and Alfa Rock Bay, access to onboard toilets and showers, and assistance from friendly crew members.

Can I stay on the boat or go ashore at Blue Lagoon? Yes, there’s a roughly 1.5-hour stop at Blue Lagoon, and you can choose to go ashore if you have the access pass, or stay on the boat to relax and avoid crowds.

Is the tour suitable for children or elderly travelers? Generally yes, but those with mobility issues or prone to seasickness might want to consider their comfort. The boat is small and well-maintained, but some walking is required ashore.

How long do the stops last? Typically, each swim stop lasts around 1 to 1.5 hours, giving ample time to swim, snorkel, relax, or explore.

What should I bring? Sunscreen, swimwear, towels, sunglasses, a sun hat, cash for extras, and snorkelling gear if you have it. Also, consider motion sickness prevention if needed.

What if the weather is bad? The provider reserves the right to change the itinerary due to weather conditions. In bad weather, the trip might be shortened or rescheduled, and full refunds are available if you cancel in advance.

This small-group boat cruise from Mellieha offers a balanced mix of scenic beauty, relaxed swimming, and expert guidance. It’s a perfect way to experience Malta’s most famous lagoons without feeling overwhelmed or crowded. For anyone looking to combine nature, tranquility, and a splash of adventure, this tour deserves a spot on your Malta itinerary.

You can check availability for your dates here: More Great Tours Nearby