Comino Blue Lagoon & Crystal Lagoon – 3 Bay Cruise

Exploring Malta’s Best Beaches and Caves on a 3-Bay Cruise

If you’re dreaming of turquoise waters, stunning coastlines, and a day filled with swimming, snorkeling, and exploring some of Malta’s most iconic spots, the Comino Blue Lagoon & Crystal Lagoon – 3 Bay Cruise might just be what you need. This 6-hour boat trip combines comfort, scenic beauty, and memorable water adventures, making it a popular choice for visitors wanting to make the most of Malta’s maritime charm.

One thing we really appreciate about this tour is how it balances well-paced stops with ample time for swimming and relaxing, especially in the Blue Lagoon and Crystal Lagoon. The boat’s limited group size — capped at 45 passengers — ensures a more intimate experience, avoiding the overwhelming crowds often found on larger cruises. However, if you’re someone who prefers total independence or wants to explore Comino on foot, keep in mind that they do require a government registration for landing from May 2025 onwards, which adds a layer of planning.

This cruise suits travelers who love water activities, scenic vistas, and a comfortable setting. It’s ideal for couples, small groups, or anyone wanting a relaxed yet exciting day on the Maltese waters. Those seeking a lively party atmosphere might prefer larger, noisier tours, but if genuine, personalized experiences are your thing, this cruise should be on your list.

Key Points

• Small Group Comfort: Limited to 45 people, ensuring space and a relaxed vibe
• Three Unique Stops: Crystal Lagoon, Blue Lagoon, Gebla Tal Halfa with snorkeling and swimming times
• Convenient Departure: Just minutes from Comino Island, facing the island directly
• Additional Sightseeing: Includes exploration of Santa Maria Caves and other scenic spots on the way back
• Amenities Onboard: Toilets, fresh water showers, and a mini bar for drinks and snacks
• Flexible Booking & Cancellation: Reserve now, pay later, with full refunds if canceled 24 hours in advance

The Full Experience: What to Expect from the Tour

This cruise starts early in the morning at Bluewaves Watersports on Marfa Bay. From there, the boat heads toward the first stop — Crystal Lagoon — a true highlight for anyone who loves crystal-clear waters and a peaceful swimming spot. Anchored for about an hour, you’ll have the chance to float in the calm, transparent waters or snorkel among the small fish and underwater rocks. Reviewers mention the staff’s friendliness and helpfulness, making this first stop a soothing introduction to the day.

Next, the boat cruises to Blue Lagoon on Comino, the most famous stop of the trip. With approximately two hours here, you’re free to explore the island on foot or stay on the boat to enjoy swimming and snorkeling. Review comments rave about the tranquility and stunning scenery, with some guests noting they preferred to stay on the boat rather than on the land, especially if they wanted a more relaxed experience away from the crowds.

The third stop is Gebla tal-Halfa, south of Gozo, where you’ll again anchor for about an hour. This is a quieter, less crowded spot, perfect for tossing in your snorkel mask and exploring underwater life or simply floating in the peaceful waters. Several reviewers appreciated this as a less touristy alternative, with one calling it “a top spot” for swimming and snorkeling.

On the way back, the boat takes you past the Santa Maria Caves, offering stunning sightseeing opportunities. The crew often shares insights about the area, adding an educational touch to the trip. They also highlight that the captain retains the right to change the itinerary based on weather or sea conditions, prioritizing safety above all.

In-Depth Look at Each Stop

Crystal Lagoon

This spot is perfect for those seeking calm, shallow waters ideal for snorkelers of all levels. The clear waters reveal underwater rocks, marine life, and the natural beauty of the lagoon itself. The one-hour stop is enough to relax or explore, and many review how peaceful and beautiful it is. The lagoon’s accessibility makes it suitable for families, couples, or solo travelers.

Blue Lagoon

The star attraction of Maltese waters, Blue Lagoon is famed for its vivid blue hues and soft sandy bottom. With two hours here, you can choose to snorkel along the edges, walk around the island, or just lie back on the boat’s sun deck. The reviews emphasize its breathtaking colors and the comfortable atmosphere onboard, with some guests mentioning it’s easier to enjoy the lagoon from the boat than trying to find space on the crowded land area.

Gebla tal-Halfa

Located south of Gozo, this secluded bay offers a quieter, less commercialized experience. Its underwater landscape provides excellent snorkeling opportunities, and the calm waters are perfect for a leisurely swim. Reviewers appreciate the peaceful vibe here, often citing it as a hidden gem compared to the more popular Blue Lagoon.

Santa Maria Caves

The boat passes by these impressive sea caves, which are worth a quick look even if they aren’t part of an organized exploration. The scenery here is dramatic, with the caves’ formations creating fantastic photo opportunities. It’s a brief sightseeing moment, but one that adds to the overall scenic value of the cruise.

What Does the Price Include and What’s Extra?

The tour’s price covers the boat trip, stops for swimming and snorkeling at the three main locations, and sightseeing of the caves. Facilities onboard include toilets, fresh water showers, and a mini bar offering soft drinks at around €2 and water at €1.50. There’s also the option to rent a diving mask for €3, which many guests took advantage of for their underwater adventures.

Food and drinks are not included, so bringing your own snacks or purchasing from the onboard mini bar is recommended. Reviewers noted the boat has a friendly, casual vibe, with a “cafe” area to relax between swims.

Practical Tips for the Tour

Because the tour is about six hours long, dressing comfortably is key. Swimsuits, a sun hat, sunglasses, and sunscreen (biodegradable is encouraged) are essentials. A towel and extra water are also recommended, especially if you plan to snorkel extensively. The boat is not suitable for those with mobility issues or electric wheelchairs, so plan accordingly.

Be punctual — boarding closes 15 minutes before departure — and check the weather forecast. The captain reserves the right to cancel or modify the trip for safety reasons, which means it’s wise to stay flexible.

Authentic Feedback from Past Guests

Reviewers consistently highlight the knowledgeable guides and the friendly crew, with some mentioning how the staff go out of their way to ensure everyone enjoys their day. For example, one guest appreciated that the crew “really wanted us to enjoy our vacation and had no complaints at all.” Many also point out the stunning scenery and how the boat’s size allows for both socializing and personal space, with one reviewer calling it “the perfect size” for a comfortable outing.

Several guests emphasized the excellent value, with some noting that this trip offers a comparable experience to more expensive tours but at a more affordable price. The inclusion of extra touches like music, a mini bar, and the option to drive the boat at the end makes the day feel special.

The Sum Up: Who Will Love This Tour?

This 3-Bay Cruise is ideal for travelers who prioritize comfort, scenic beauty, and a relaxed atmosphere. It’s perfect for small groups, couples, or solo travelers who want a more intimate experience with fewer crowds. The well-paced stops and friendly crew make it suitable for families and anyone keen on snorkeling, swimming, and enjoying Malta’s natural splendors.

If you’re looking for a day that combines sightseeing with refreshing dips and stunning views, this cruise offers excellent value and memorable moments. Just remember, it’s not the party boat environment — it’s about enjoying the water, nature, and each other in a peaceful setting.

FAQ

Is there a limit on the number of people onboard?
Yes, the boat capacity is 70, but it’s limited to 45 guests to ensure plenty of space and comfort.

What should I bring for the trip?
Bring sunglasses, a sun hat, swimwear, a towel, sunscreen (preferably biodegradable), and any personal snorkeling gear you wish to use.

Are food and drinks included?
No, food and drinks are not included. There is a mini bar onboard with soft drinks and water available for purchase.

Can I explore Comino on foot?
Yes, you can explore Comino on foot during the stop at Blue Lagoon, but starting from May 2025, you’ll need to register for an entry ticket through the government’s official system.

What is the duration of the cruise?
The tour lasts approximately 6 hours, with a morning departure from Bluewaves Watersports.

Is this tour suitable for children or mobility-restricted travelers?
It’s not suitable for unaccompanied minors or wheelchair users, and the boat’s facilities are limited for those with mobility issues.

In essence, this cruise offers a beautifully balanced day on the water with plenty of swimming and sightseeing, combined with a friendly, intimate atmosphere and great value. Whether you’re a solo traveler eager for a scenic adventure or a couple looking for a peaceful day out, this trip will leave you with unforgettable memories of Malta’s stunning coastline.