Comino: Blue Lagoon, Crystal Lagoon and Sea Caves Boat Tour

If you’re planning a trip to Malta and want to explore its stunning coastline and islands in a relaxed, intimate setting, this boat tour around Comino might just be your perfect match. It’s a 3–4 hour adventure that combines sightseeing, swimming, snorkeling, and iconic photo stops—all aboard a cozy boat with only 24 people. If crowds aren’t your thing and you prefer a more personal experience, this tour could become a highlight of your Malta trip.

What we really love about this experience is the smaller group size, which allows for more flexibility and direct interaction with the crew. Plus, the stops at the Blue Lagoon and Crystal Lagoon promise crystal-clear waters that are Instagram-worthy, ideal for swimming and snorkeling. One potential drawback? Depending on the day, some spots, especially the Blue Lagoon, can get quite busy, but the boat’s itinerary and timing help you beat the crowds for most of the trip. This tour suits travelers who enjoy natural beauty, want to maximize their time exploring without wasting hours on large tours, and love the idea of swimming in some of Malta’s most famous spots.

Key Points

• Small Group Size: Only 24 people on board, for a more personal and flexible experience.
• Diverse Stops: From the iconic Blue Lagoon to sea caves and Elephant Rock, the variety keeps the trip engaging.
• Ideal for Water Lovers: Swimming, snorkeling, and paddleboarding are included to make the most of the turquoise waters.
• Expert Crew: Friendly, knowledgeable guides enhance the experience and provide useful insights.
• Value for Money: Several stops with ample time for swimming and exploring, plus free paddleboarding and noodles.
• Booking Flexibility: Cancel up to 24 hours in advance with the option to reserve now and pay later.

An In-Depth Look at the Comino Boat Tour

Starting Point and First Impressions

The tour begins at the Cirkewwa Kiosk Cafe, a straightforward meeting point with ample free parking. From there, you’ll board a spacious boat designed for comfort—small enough to foster a cozy atmosphere but large enough for a smooth ride. As the boat departs, you’ll glide past the Comino Tower, a historic structure that’s been featured in films like The Count of Monte Cristo. This initial cruise offers a nice preview of the scenic coastlines and sets a relaxing tone for the day.

Crystal Lagoon: A Vibrant, Clear Stop

The first major stop is the Crystal Lagoon, on the island’s western side. This 45-minute session is ideal for swimming and snorkeling in waters famed for their incredible clarity. Reviewers mention the vibrant marine life and the inviting turquoise waters that make it worth every second. We loved the way the guide explained the best spots for viewing marine creatures and how the shallow waters are perfect for beginners.

One guest, Jodi, noted, “All the stops were beautiful, and the smaller boat meant a more personal experience.” During this time, you can also try stand-up paddleboarding, which is included, or simply float with the provided noodles—the perfect way to relax and take in the scenery.

The Iconic Blue Lagoon: A Must-See

Next up is the Blue Lagoon, Malta’s most famous swimming spot. With a full hour allocated, you’ll have plenty of time to swim, snorkel, or just soak up the sun on the sandy shoreline. The sunlight hitting the water creates dazzling blue hues, and the shallow seabed makes it perfect for snorkelers of all levels.

A key detail that travelers should note: effective from May 2025, visitors wishing to step foot on the Blue Lagoon need a QR code, which must be booked in advance through the official website. If you prefer to stay on the boat, you can, but for those eager to get in the water, booking your time slot is essential. Several reviewers, including Beth, mention how much they loved the opportunity to swim in the iconic spot, especially since the tour allows plenty of free time without feeling rushed.

Scenic Passes and Photo Opportunities

After Blue Lagoon, the boat cruises past scenic landmarks like Promising Rock, a natural formation that offers excellent photo opportunities, and the beautiful San Niklaw Bay. The boat’s passage along Gozitan coastline provides spectacular views, and you’ll get a chance to admire the charming Comino Hotel from the water.

Santa Maria Bay and Its Hidden Charms

The next stop is Santa Maria Bay, where the group spends about 45 minutes. It’s a quieter alternative to Blue Lagoon, with a sandy beach perfect for swimming, snorkeling, or just soaking up the sun. Reviewers rave about the water’s color here, and many appreciate the chance to explore the bay without the crowds. Some even take a walk to explore the area, making it a relaxing break from the busier spots.

Exploring Sea Caves and Elephant Rock

The tour wraps up with visits to the Santa Maria Caves and the striking Elephant Rock. Both sites are natural wonders and offer fantastic photo ops. The caves are accessible for quick visits, where you can snap pictures of their impressive formations. The Elephant Rock, named for its unique shape, is a favorite among reviewers for its dramatic presence and photo potential.

Final Return and Reflection

After these stops, the boat heads back to Cirkewwa, giving you a chance to relax and reflect on the day. Many reviewers, like Hannah, appreciated the friendly crew and the well-paced stops, noting that the boat handled waves well even when weather conditions changed.

The Experience in Detail

What’s Included and What’s Not

The tour covers a lot of ground for a half-day, with generous swim stops and scenic cruising. Included are complimentary stand-up paddleboards, free noodles, and a friendly crew that’s eager to share insights about the sites. Life jackets are available if needed, and onboard toilets keep things convenient.

However, food and drinks aren’t included, so bringing some snacks or buying at beach stops is advisable. Snorkeling gear is rentable onboard if you don’t have your own, which is handy for maximizing underwater exploration.

The Real Value

At a price that includes multiple stops, snorkeling, paddleboarding, and expert guidance, this tour offers good value. Travelers like Beth mention how helpful and friendly the staff was, which adds to the overall enjoyment. Given the small group size, you’re more likely to get personalized tips from the crew, making it especially beneficial for less experienced swimmers or first-timers to Malta.

Considerations and Tips

• Book your Blue Lagoon time slot early to avoid missing out, especially in peak season.
• Bring sunscreen, a hat, and plenty of water—the Malta sun can be intense.
• If you’re prone to seasickness, be mindful that the boat, although stable, may experience waves.
• The tour isn’t suitable for pregnant women, according to the provider, so plan accordingly.
• Arrive early for the meeting point, and clarify the crossing from the café to the boat if it’s your first time.

Who Is This Tour Best For?

This experience is ideal for travelers who want to combine sightseeing and water activities in a compact window. It suits those who value personalized service, want to avoid the chaos of larger tours, and are eager to explore famous Malta landmarks like the Blue Lagoon and sea caves. It’s perfect for families, couples, or groups who want a relaxed pace with plenty of time to swim and take photos.

If you love the water, appreciate natural beauty, and enjoy small-group adventures, this tour will likely be a highlight of your Malta holiday. It’s also a great choice if you’re looking for value for money, considering how much scenery, snorkeling, and photo opportunities are packed into just a few hours.

Frequently Asked Questions

Do I need to bring my own snorkeling gear?
Snorkeling gear isn’t included but can be rented onboard if you don’t have your own. It’s a good idea to bring your mask and fins if you’re serious about underwater exploration.

How long are the stops at each location?
Most stops are around 45 minutes to 1 hour, giving you ample time to swim, snorkel, or relax. Santa Maria Bay, for example, has 45 minutes, while Blue Lagoon is a full hour.

Is there a dress code or specific gear I should wear?
It’s best to wear swimwear, bring a towel, and apply sunscreen. During the walk to the Blue Lagoon, some guests opt for beachwear or comfortable walking shoes if exploring nearby areas.

Can I stay onboard during the Blue Lagoon visit?
Yes, if you prefer not to swim or snorkel, you can stay on the boat. No QR code is needed unless you plan to set foot on the lagoon itself.

What should I do if I’m prone to seasickness?
The boat is relatively stable, but if seasickness is a concern, consider taking medication beforehand. The crew is friendly and can provide support if needed.

Are there any restrictions I should be aware of?
Yes, the tour isn’t suitable for pregnant women or those prone to seasickness. Also, littering, fireworks, and making fires are prohibited for environmental safety.

Final Thoughts

This boat tour around Comino offers a well-rounded experience packed with natural beauty, fun water activities, and scenic stops. Its small-group setup creates a more tailored, relaxed atmosphere, making it especially appealing for travelers seeking an authentic Malta adventure without the crowds. The stops at the Blue Lagoon and Crystal Lagoon are undoubtedly the highlights—perfect for cooling off and capturing incredible photos.

While the busy season can bring crowds, the itinerary and timing help mitigate this, ensuring you get the most out of each stop. The knowledgeable guides and friendly crew will help make your day smooth, enjoyable, and memorable. It’s a fantastic way to see some of Malta’s most famous sights in just half a day, with enough flexibility to suit different preferences.

If you’re after a personalized, water-focused trip that balances sightseeing with relaxation, this tour ticks all the boxes. It’s especially suited for those who want to make the most of Malta’s coast and enjoy the stunning, clear waters in a comfortable, intimate setting.